Using rustybam on PAFs for SafFire
rb trim-paf .test/asm_small.paf `#trims back alignments that align the same query sequence more than once` \ | rb break-paf --max-size 100 `#breaks the a...
Posts
StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps
StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps https://t.co/4BAUkqegGK #bioRxiv— bioRxiv (@biorxivp...
Segmental duplications in a complete human genome
Excited to finally share: Segmental duplications and their variation in a complete human genome! This is a product of an awesome collaboration in the T2T con...
Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads
The Eichler lab at @uwgenome has compared high-fidelity (#HiFi) and continuous long-read (#CLR) datasets, and concluded that HiFi may be the most effective s...
Long-read sequence and assembly of segmental duplications
It's out! Check out my first first author paper "Long-read sequence and assembly of segmental duplications" out today at @naturemethods (https:...
- Using rustybam on PAFs for SafFire -
- StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps -
- Segmental duplications in a complete human genome -
- Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads -
- Long-read sequence and assembly of segmental duplications -
2022
Using rustybam on PAFs for SafFire
rb trim-paf .test/asm_small.paf `#trims back alignments that align the same query sequence more than once` \ | rb break-paf --max-size 100 `#breaks the a...
2021
StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps
StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps https://t.co/4BAUkqegGK #bioRxiv— bioRxiv (@biorxivp...
Segmental duplications in a complete human genome
Excited to finally share: Segmental duplications and their variation in a complete human genome! This is a product of an awesome collaboration in the T2T con...
2019
Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads
The Eichler lab at @uwgenome has compared high-fidelity (#HiFi) and continuous long-read (#CLR) datasets, and concluded that HiFi may be the most effective s...
2018
Long-read sequence and assembly of segmental duplications
It's out! Check out my first first author paper "Long-read sequence and assembly of segmental duplications" out today at @naturemethods (https:...