Using rustybam on PAFs for SafFire
rb trim-paf .test/asm_small.paf `#trims back alignments that align the same query sequence more than once` \ | rb break-paf --max-size 100 `#breaks the a...
I was born in 1992 in Carson City, Nevada, where I developed a love for the high desert and the Sierra Nevada mountains. After a brief period in Elko, Nevada, my family relocated to Eureka, California, where I discovered a new love for the Pacific Ocean and the Redwoods.
My academic journey began at College of the Redwoods where I found dedicated professors who fueled my passion for learning. This early college experience proved invaluable as I completed Associate of Arts degrees in math and science. Following this I attended Princeton University and in 2015 I graduated with a B.S.E. in computer science and a minor in quantitative and computational biology. During my time at Princeton, I worked in the lab of Alison Gammie improving the reference genome for the yeast strain W303. In 2016, I joined the Department of Genome Sciences at the University of Washington in pursuit of a PhD, ultimately joining the lab of Evan E. Eichler to study the sequence and assembly of segmental duplications in humans and nonhuman primates. I am continued my work in the Eichler lab as a postdoctoral fellow while making contributions to the T2T and HPRC. Currently, I am in Andrew Stergachis’ lab at the University of Washington deepening my understanding of gene regulation and human disease.
To learn about my dog classification system see here (credit Michelle Noyes).
rb trim-paf .test/asm_small.paf `#trims back alignments that align the same query sequence more than once` \ | rb break-paf --max-size 100 `#breaks the a...
StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps https://t.co/4BAUkqegGK #bioRxiv— bioRxiv (@biorxivp...
Excited to finally share: Segmental duplications and their variation in a complete human genome! This is a product of an awesome collaboration in the T2T con...
The Eichler lab at @uwgenome has compared high-fidelity (#HiFi) and continuous long-read (#CLR) datasets, and concluded that HiFi may be the most effective s...
It's out! Check out my first first author paper "Long-read sequence and assembly of segmental duplications" out today at @naturemethods (https:...